Ok i download and installed the Windows Version 1Password and created a master password call 'password' ironically.
I can extract the hash from and the keychain and JTR finds the master password.
It seems the iPhone app or more generically the mobile version of 1Pasword maybe of a slightly different than it's desktop cousin, back to the drawing board for now.
./agilekc2john.py 1Password.agilekeychain > myagilehash.txt
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./john --format=agilekeychain-opencl --wordlist=password.lst myagilehash.txt
OpenCL platform 0: AMD Accelerated Parallel Processing, 2 device(s).
Device 0: Juniper (AMD Radeon HD 6700 Series)
Local worksize (LWS) 64, Global worksize (GWS) 9216
Loaded 1 password hash (1Password Agile Keychain PBKDF2-HMAC-SHA-1 AES [OpenCL])
password (1Password.agilekeychain)
guesses: 1 time: 0:00:00:00 DONE (Tue Apr 2 23:05:11 2013) c/s: 8646 trying: 123456 - sss
Code:
$agilekeychain$2*10000*8*abdcd67f777f98b4*1040*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*10000*8*86c1647dcf8d0696*1040*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:password
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Edit...
Here are the encrypted keychains for Windows and iPhone Version master password, as you can see they are different, well in a way the key is stored in file.
Windows 1Password
http://pastebin.com/id2tDXLv
iPhone 1Password (Latest Version 4.1.2)
http://pastebin.com/YKcATm1N